ydiF [2018-05-04 18:18:45]

similar to ABC transporter (ATP-binding protein)

locus: BSU05950

pI: 4.87

mw: 73.27 kDa

protein length: 642 aa

gene length: 1926 bp

function: unknown

product: ABC transporter (ATP-binding protein)

essential: no

synonyms

Genomic Context

categories

• [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.1|ABC transporters] → [category|SW 1.2.1.4|Unknown ABC transporters]

Gene

Coordinates: 644,528 → 646,456

The protein

Protein family

• EF3 subfamily (according to Swiss-Prot)

Paralogous protein(s)

• [protein|2F79DB15D359A127C2D833CC0465E18E1725F539|YkpA], [protein|47B644F334A0BD501E77A198A61CE0F22BAB3E5E|YfmM], [protein|F69F15198ACF8A8347C450EEC09F000EECEDEC41|YfmR]

Structure

• [PDB|3J5S] (EttA from E. coli, 34% identity) [pubmed|24389465]
• [PDB|4FIN] (EttA from E. coli, 34% identity) [pubmed|24389466]

Expression and Regulation

Operons

• genes: [gene|1F56D3275386BB54A774BFA045C09E36D1268471|ydiF]
  description: [pubmed|22383849]

Biological materials

Mutant

• MGNA-C199 (ydiF::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2197 NBRP B. subtilis, Japan]
• BKE05950 (Δ[gene|1F56D3275386BB54A774BFA045C09E36D1268471|ydiF]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE05950 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATTATTTCACCTCTGCT, downstream forward: _UP4_TAAAAAAGTCAAGCACCTCT
• BKK05950 (Δ[gene|1F56D3275386BB54A774BFA045C09E36D1268471|ydiF]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK05950 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATTATTTCACCTCTGCT, downstream forward: _UP4_TAAAAAAGTCAAGCACCTCT

References

Reviews

• 24500425

Original publications

• 10092453,20525796,24389466,24389465,27006457